Package: admixr 0.10.0

Martin Petr

admixr: An Interface for Running 'ADMIXTOOLS' Analyses

An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.

Authors:Martin Petr [aut, cre]

admixr_0.10.0.tar.gz
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admixr.pdf |admixr.html✨
admixr/json (API)
NEWS

# Install 'admixr' in R:
install.packages('admixr', repos = c('https://bodkan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bodkan/admixr/issues

On CRAN:

bioinformaticspopgenpopulation-genetics

7.42 score 29 stars 91 scripts 279 downloads 5 mentions 25 exports 29 dependencies

Last updated 2 days agofrom:f629302825. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 18 2025
R-4.5-winOKFeb 18 2025
R-4.5-macOKFeb 18 2025
R-4.5-linuxOKFeb 18 2025
R-4.4-winOKFeb 18 2025
R-4.4-macOKFeb 18 2025
R-4.3-winOKFeb 18 2025
R-4.3-macOKFeb 18 2025

Exports:%>%count_snpsddownload_dataeigenstratf3f4f4ratiofilter_bedloginfomerge_eigenstratqpAdmqpAdm_filterqpAdm_rotationqpWaveread_genoread_indread_outputread_snprelabelresettransversions_onlywrite_genowrite_indwrite_snp

Dependencies:bitbit64clicliprcpp11crayondplyrfansigenericsgluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readrrlangstringistringrtibbletidyselecttzdbutf8vctrsvroomwithr

Fitting qpAdm models with a 'rotation' strategy

Martin Petr

Rendered fromvignette-02-qpAdm.Rmdusingknitr::rmarkdownon Feb 18 2025.

Last update: 2024-05-10
Started: 2024-05-10

Tutorial and basic overview of the admixr R package

Martin Petr

Rendered fromvignette-01-tutorial.Rmdusingknitr::rmarkdownon Feb 18 2025.

Last update: 2024-05-10
Started: 2024-05-10