Package: admixr 0.9.1.9000

Martin Petr

admixr: An Interface for Running 'ADMIXTOOLS' Analyses

An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.

Authors:Martin Petr [aut, cre]

admixr_0.9.1.9000.tar.gz
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admixr.pdf |admixr.html✨
admixr/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/bodkan/admixr/issues

On CRAN:

bioinformaticspopgenpopulation-genetics

25 exports 28 stars 2.90 score 29 dependencies 5 mentions 71 scripts 364 downloads

Last updated 4 months agofrom:2a45a27a1d. Checks:OK: 7. Indexed: yes.

Exports:%>%count_snpsddownload_dataeigenstratf3f4f4ratiofilter_bedloginfomerge_eigenstratqpAdmqpAdm_filterqpAdm_rotationqpWaveread_genoread_indread_outputread_snprelabelresettransversions_onlywrite_genowrite_indwrite_snp

Dependencies:bitbit64clicliprcpp11crayondplyrfansigenericsgluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readrrlangstringistringrtibbletidyselecttzdbutf8vctrsvroomwithr