Package: admixr 0.9.1.9000
Martin Petr
admixr: An Interface for Running 'ADMIXTOOLS' Analyses
An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://reich.hms.harvard.edu/software>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.
Authors:
admixr_0.9.1.9000.tar.gz
admixr_0.9.1.9000.zip(r-4.5)admixr_0.9.1.9000.zip(r-4.4)admixr_0.9.1.9000.zip(r-4.3)
admixr_0.9.1.9000.tgz(r-4.4-any)admixr_0.9.1.9000.tgz(r-4.3-any)
admixr_0.9.1.9000.tar.gz(r-4.5-noble)admixr_0.9.1.9000.tar.gz(r-4.4-noble)
admixr_0.9.1.9000.tgz(r-4.4-emscripten)admixr_0.9.1.9000.tgz(r-4.3-emscripten)
admixr.pdf |admixr.html✨
admixr/json (API)
NEWS
| # Install 'admixr' in R: |
| install.packages('admixr', repos = c('https://bodkan.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bodkan/admixr/issues
bioinformaticspopgenpopulation-genetics
Last updated 7 months agofrom:2a45a27a1d. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 06 2024 |
| R-4.5-win | OK | Nov 06 2024 |
| R-4.5-linux | OK | Nov 06 2024 |
| R-4.4-win | OK | Nov 06 2024 |
| R-4.4-mac | OK | Nov 06 2024 |
| R-4.3-win | OK | Nov 06 2024 |
| R-4.3-mac | OK | Nov 06 2024 |
Exports:%>%count_snpsddownload_dataeigenstratf3f4f4ratiofilter_bedloginfomerge_eigenstratqpAdmqpAdm_filterqpAdm_rotationqpWaveread_genoread_indread_outputread_snprelabelresettransversions_onlywrite_genowrite_indwrite_snp
Dependencies:bitbit64clicliprcpp11crayondplyrfansigenericsgluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogressR6readrrlangstringistringrtibbletidyselecttzdbutf8vctrsvroomwithr
Fitting qpAdm models with a 'rotation' strategy
Rendered fromvignette-02-qpAdm.Rmdusingknitr::rmarkdownon Nov 06 2024.Last update: 2024-05-10
Started: 2024-05-10
Tutorial and basic overview of the admixr R package
Rendered fromvignette-01-tutorial.Rmdusingknitr::rmarkdownon Nov 06 2024.Last update: 2024-05-10
Started: 2024-05-10
